Cloud-native genomics workflow platform
Guided data upload, pipeline configuration, resource estimation, and reproducible cloud execution for genomics workflows.
CASSIE is a cloud-native genomics workflow platform that replaces manual pipeline construction with guided UI selections. User-defined configurations are translated into reproducible Nextflow workflows orchestrated on scalable Kubernetes infrastructure.
Workflow Tools
Guided tools for reproducible, cloud-native genomics workflows
Replace manual pipeline construction with guided UI selections, smart suggestions, and reusable pipeline options.
User-defined configurations are translated into reproducible Nextflow workflows for consistent analysis runs.
Workflows run on Kubernetes-backed cloud infrastructure built for compute and memory intensive genomics workloads.
Upload genomic files from your computer or Google Drive and manage workflow inputs and outputs in one place.
Estimate runtime and cost from input size, selected tools, and compute resource needs before execution.
Use shared pipelines and discussions to support reproducibility, reuse, and smoother team collaboration.
Project Context
CASSIE addresses the need for accessible, reproducible, and scalable genomics workflows. It helps users move from uploaded data to configured pipelines, estimated resources, cloud execution, and comprehensive results.
The platform combines guided UI selections with reproducible Nextflow workflows orchestrated on Kubernetes, reducing manual setup while preserving workflow clarity and repeatability.
Next Steps
Explore our project documentation, meet the team, and learn more about CASSIE.
